normalized NLR count
## `summarise()` has grouped output by 'KO'. You can override using the `.groups`
## argument.
| KO | Filter_ID | AUC |
|---|---|---|
| Blue | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 7287552 |
| Blue | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 8774893 |
| Blue | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 6916298 |
| Blue | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 9284429 |
| Green | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 8466275 |
| Green | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 7940839 |
| Green | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 3866721 |
| Green | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 4584777 |
| Orange | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 11475883 |
| Orange | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 12490358 |
| Orange | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 9920774 |
| Orange | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 8832324 |
| Pos. ctrl | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 17768375 |
| Pos. ctrl | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 16501387 |
| Pos. ctrl | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 13852846 |
| Pos. ctrl | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 14042435 |
| Purple | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 8078002 |
| Purple | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 6749528 |
| Purple | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 3672978 |
| Purple | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 3306923 |
| Scr_high | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 18796406 |
| Scr_high | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 16139231 |
| Scr_high | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 15263737 |
| Scr_high | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 15461650 |
| Scr_higher | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 12283676 |
| Scr_higher | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 6165890 |
| Scr_higher | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 9565769 |
| Scr_higher | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 6764481 |
| Scr_low | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 16522798 |
| Scr_low | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 15678339 |
| Scr_low | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 12432741 |
| Scr_low | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 11630173 |
| Scr_mid | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 9797703 |
| Scr_mid | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 10124519 |
| Scr_mid | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 3829163 |
| Scr_mid | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 5022985 |
| Yellow | 20230501/MKN45/PBMCs D1/CEA-TCB/- | 5575144 |
| Yellow | 20230501/MKN45/PBMCs D2/CEA-TCB/- | 6472994 |
| Yellow | 20230501/MKN45/PBMCs D3/CEA-TCB/- | 4786186 |
| Yellow | 20230501/MKN45/PBMCs D4/CEA-TCB/- | 8071852 |
The following analysis is plotting each sample with its corresponding control based on similar growth and seeding. The area under the curve (AUC) was calculated for each cell line and each seeding control. The difference in AUC (AUC delta) between sample and each seeding control was then calculated. The smallest AUC delta corresponds to the most similar growth and seeding. Therefore the samples where assigned to the controls based on their smallest AUC delta and graphs were plotted accordingly.
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